Index A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W A aaggregate() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) abbr (bionty.CellLine attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Tissue attribute) (clinicore.Medication attribute) (lamindb.Project attribute) (lamindb.Reference attribute) (wetlab.Biologic attribute) (wetlab.Compound attribute) absolute() (lamindb.UPath method) abulk_create() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) abulk_update() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) access_token (lamindb.setup.core.UserSettings attribute) acontains() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) acount() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) acreate() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) add() (lamindb.core.LabelManager method) add_feature_set() (lamindb.core.FeatureManager method) add_from() (lamindb.core.LabelManager method) add_new_from() (lamindb.core.AnnDataCatManager method) (lamindb.core.DataFrameCatManager method) (lamindb.core.MuDataCatManager method) (lamindb.core.TiledbsomaCatManager method) add_new_from_columns() (lamindb.core.DataFrameCatManager method) (lamindb.core.MuDataCatManager method) add_new_from_var_index() (lamindb.core.AnnDataCatManager method) (lamindb.core.MuDataCatManager method) add_schema() (lamindb.core.FeatureManager method) add_source() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (clinicore.Medication class method) (wetlab.Compound class method) add_synonym() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Tissue method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (lamindb.core.CanCurate method) (lamindb.Feature method) (lamindb.Param method) (lamindb.Person method) (lamindb.Project method) (lamindb.Reference method) (lamindb.Schema method) (lamindb.ULabel method) (lamindb.User method) (wetlab.Biologic method) (wetlab.Biosample method) (wetlab.CombinationPerturbation method) (wetlab.Compound method) (wetlab.CompoundPerturbation method) (wetlab.Donor method) (wetlab.EnvironmentalPerturbation method) (wetlab.Experiment method) (wetlab.GeneticPerturbation method) (wetlab.PerturbationTarget method) (wetlab.Techsample method) (wetlab.Well method) add_values() (lamindb.core.FeatureManager method) (lamindb.core.ParamManager method) administered_datetime (clinicore.Treatment attribute) aearliest() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) aexists() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) aexplain() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) afirst() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) age (clinicore.Patient attribute) (wetlab.Donor attribute) aget() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) aget_or_create() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) aggregate() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) ain_bulk() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) aiterator() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) alast() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) alatest() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) alias() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) all() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) anchor (lamindb.UPath property) anndata_file_pbmc68k_test() (in module lamindb.core.datasets) anndata_human_immune_cells() (in module lamindb.core.datasets) anndata_mouse_sc_lymph_node() (in module lamindb.core.datasets) anndata_pbmc3k_processed() (in module lamindb.core.datasets) anndata_pbmc68k_reduced() (in module lamindb.core.datasets) anndata_suo22_Visium10X() (in module lamindb.core.datasets) anndata_with_obs() (in module lamindb.core.datasets) AnnDataAccessor (class in lamindb.core.storage) AnnDataCatManager (class in lamindb.core) AnnDataCurator (class in lamindb.curators) annotate() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) api_key (lamindb.setup.core.UserSettings attribute) append() (lamindb.Collection method) (lamindb.core.RecordList method) args (lamindb.errors.DoesNotExist attribute) (lamindb.errors.IntegrityError attribute) (lamindb.errors.InvalidArgument attribute) (lamindb.errors.MissingContextUID attribute) (lamindb.errors.NotebookNotSaved attribute) (lamindb.errors.RecordNameChangeIntegrityError attribute) (lamindb.errors.UpdateContext attribute) (lamindb.errors.ValidationError attribute) array_rank (lamindb.Feature attribute) array_shape (lamindb.Feature attribute) array_size (lamindb.Feature attribute) Artifact (class in lamindb) artifact_silence_missing_run_warning (lamindb.core.subsettings.CreationSettings attribute) artifact_skip_size_hash (lamindb.core.subsettings.CreationSettings attribute) ArtifactKind (in module lamindb.base.types) artifacts (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (clinicore.Biosample attribute) (clinicore.ClinicalTrial attribute) (clinicore.Medication attribute) (clinicore.Patient attribute) (clinicore.Treatment attribute) (lamindb.Collection attribute) (lamindb.core.FeatureValue attribute) (lamindb.core.ParamValue attribute) (lamindb.Project attribute) (lamindb.Reference attribute) (lamindb.Schema attribute) (lamindb.Storage attribute) (lamindb.ULabel attribute) (wetlab.Biologic attribute) (wetlab.Biosample attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.CompoundPerturbation attribute) (wetlab.Donor attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.Experiment attribute) (wetlab.GeneticPerturbation attribute) (wetlab.PerturbationTarget attribute) (wetlab.Techsample attribute) (wetlab.Well attribute) as_manager() (lamindb.core.QuerySet class method) as_posix() (lamindb.UPath method) as_uri() (lamindb.UPath method) aupdate() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) aupdate_or_create() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) authors (lamindb.Reference attribute) auto_connect (lamindb.setup.core.SetupSettings property) auto_created (lamindb.core.QueryManager attribute) B BackedAccessor (class in lamindb.core.storage) BasicRecord (class in lamindb.core) batch (clinicore.Biosample attribute) (wetlab.Biosample attribute) (wetlab.Donor attribute) (wetlab.Techsample attribute) BFXPipeline (class in bionty.base) Biologic (class in wetlab) BiologicType (in module wetlab) bionty module bionty.base module bionty.core module BioRecord (class in bionty.core) BioSample (class in bionty.base) Biosample (class in clinicore) (class in wetlab) biosamples (wetlab.Techsample attribute) biotype (bionty.Gene attribute) birth_date (clinicore.Patient attribute) bmi (wetlab.Donor attribute) bulk_create() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) bulk_update() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) C cache() (lamindb.Artifact method) (lamindb.Collection method) cache_dir (lamindb.core.Settings property) (lamindb.setup.core.SetupSettings property) (lamindb.setup.core.StorageSettings property) CanCurate (class in lamindb.core) cat (lamindb.curators.DataFrameCurator property) categoricals (lamindb.core.AnnDataCatManager property) (lamindb.core.CatManager property) (lamindb.core.DataFrameCatManager property) (lamindb.core.MuDataCatManager property) (lamindb.core.TiledbsomaCatManager property) CatManager (class in lamindb.core) cell_lines (wetlab.Biosample attribute) cell_types (clinicore.Biosample attribute) (wetlab.Biosample attribute) CellLine (class in bionty) (class in bionty.base) CellMarker (class in bionty) (class in bionty.base) CellType (class in bionty) (class in bionty.base) check() (lamindb.core.QueryManager method) check_vars_non_aligned() (lamindb.core.MappedCollection method) check_vars_sorted() (lamindb.core.MappedCollection method) chembl_id (clinicore.Medication attribute) (wetlab.Compound attribute) children (lamindb.Project attribute) (lamindb.ULabel attribute) chmod() (lamindb.UPath method) clean_up_failed_runs() (lamindb.core.DataFrameCatManager method) clear() (lamindb.core.RecordList method) clinical_trial (clinicore.Biosample attribute) ClinicalTrial (class in clinicore) clinicore module close() (in module lamindb.setup) (lamindb.core.MappedCollection method) (lamindb.core.storage.AnnDataAccessor method) closed (lamindb.core.MappedCollection property) (lamindb.core.storage.AnnDataAccessor property) cloud_to_local() (lamindb.setup.core.StorageSettings method) cloud_to_local_no_update() (lamindb.setup.core.StorageSettings method) code (lamindb.errors.MissingContextUID attribute) (lamindb.errors.UpdateContext attribute) coerce_dtype (lamindb.Schema property) Collection (class in lamindb) collections (clinicore.ClinicalTrial attribute) (lamindb.Artifact attribute) (lamindb.Project attribute) (lamindb.Reference attribute) (lamindb.ULabel attribute) column (wetlab.Well attribute) CombinationPerturbation (class in wetlab) complex_filter() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) components (lamindb.Schema attribute) COMPOSITE (lamindb.core.storage.VALID_SUFFIXES attribute) composites (lamindb.Schema attribute) Compound (class in wetlab) compound (wetlab.CompoundPerturbation attribute) compound_perturbations (wetlab.CombinationPerturbation attribute) CompoundPerturbation (class in wetlab) concentration (wetlab.CompoundPerturbation attribute) concentration_unit (wetlab.CompoundPerturbation attribute) connect() (in module lamindb) contains() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) Context (class in lamindb.core) context (in module lamindb) contribute_to_class() (lamindb.core.QueryManager method) copy() (lamindb.core.RecordList method) count() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) (lamindb.core.RecordList method) create() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) (lamindb.setup.migrate class method) create_relationship() (bionty.base.Ontology method) create_term() (bionty.base.Ontology method) created_artifacts (lamindb.User attribute) created_at (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (clinicore.Biosample attribute) (clinicore.ClinicalTrial attribute) (clinicore.Medication attribute) (clinicore.Patient attribute) (clinicore.Treatment attribute) (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.core.FeatureValue attribute) (lamindb.core.ParamValue attribute) (lamindb.Feature attribute) (lamindb.Param attribute) (lamindb.Person attribute) (lamindb.Project attribute) (lamindb.Reference attribute) (lamindb.Run attribute) (lamindb.Schema attribute) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (wetlab.Biologic attribute) (wetlab.Biosample attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.CompoundPerturbation attribute) (wetlab.Donor attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.Experiment attribute) (wetlab.GeneticPerturbation attribute) (wetlab.PerturbationTarget attribute) (wetlab.Techsample attribute) (wetlab.Well attribute) created_by (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (clinicore.Biosample attribute) (clinicore.ClinicalTrial attribute) (clinicore.Medication attribute) (clinicore.Patient attribute) (clinicore.Treatment attribute) (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.core.FeatureValue attribute) (lamindb.core.ParamValue attribute) (lamindb.core.TracksRun attribute) (lamindb.Feature attribute) (lamindb.Param attribute) (lamindb.Person attribute) (lamindb.Project attribute) (lamindb.Reference attribute) (lamindb.Run attribute) (lamindb.Schema attribute) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (wetlab.Biologic attribute) (wetlab.Biosample attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.CompoundPerturbation attribute) (wetlab.Donor attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.Experiment attribute) (wetlab.GeneticPerturbation attribute) (wetlab.PerturbationTarget attribute) (wetlab.Techsample attribute) (wetlab.Well attribute) created_by_id (lamindb.core.TracksRun attribute) created_runs (lamindb.User attribute) created_transforms (lamindb.User attribute) creation (lamindb.core.Settings property) creation_counter (lamindb.core.QueryManager attribute) CreationSettings (class in lamindb.core.subsettings) CurateLookup (class in lamindb.core) Curator (class in lamindb.curators) (in module lamindb) currently_used (bionty.Source attribute) cwd() (lamindb.UPath class method) D data_artifact (lamindb.Collection property) dataframe_artifact (bionty.Source attribute) DataFrameCatManager (class in lamindb.core) DataFrameCurator (class in lamindb.curators) date (lamindb.Reference attribute) (wetlab.Experiment attribute) dates() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) datetimes() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) db (lamindb.core.QueryManager property) (lamindb.core.QuerySet property) (lamindb.setup.core.InstanceSettings property) db_manager() (lamindb.core.QueryManager method) deceased (clinicore.Patient attribute) deceased_date (clinicore.Patient attribute) deconstruct() (lamindb.core.QueryManager method) default_value (lamindb.Feature property) defer() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) defined_migrations() (lamindb.setup.migrate class method) delete() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (in module lamindb.setup) (lamindb.Artifact method) (lamindb.Collection method) (lamindb.core.BasicRecord method) (lamindb.core.FeatureValue method) (lamindb.core.IsVersioned method) (lamindb.core.ParamValue method) (lamindb.core.QuerySet method) (lamindb.core.Record method) (lamindb.core.TracksRun method) (lamindb.core.TracksUpdates method) (lamindb.Feature method) (lamindb.Param method) (lamindb.Person method) (lamindb.Project method) (lamindb.Reference method) (lamindb.Run method) (lamindb.Schema method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (wetlab.Biologic method) (wetlab.Biosample method) (wetlab.CombinationPerturbation method) (wetlab.Compound method) (wetlab.CompoundPerturbation method) (wetlab.Donor method) (wetlab.EnvironmentalPerturbation method) (wetlab.Experiment method) (wetlab.GeneticPerturbation method) (wetlab.PerturbationTarget method) (wetlab.Techsample method) (wetlab.Well method) deploy() (lamindb.setup.migrate class method) deployed_migrations() (lamindb.setup.migrate class method) deprecated() (in module lamindb.base) describe() (lamindb.Artifact method) (lamindb.Collection method) (lamindb.Schema method) description (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (clinicore.Biosample attribute) (clinicore.ClinicalTrial attribute) (clinicore.Medication attribute) (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.core.Context property) (lamindb.Feature attribute) (lamindb.Reference attribute) (lamindb.Schema attribute) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (wetlab.Biologic attribute) (wetlab.Biosample attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.CompoundPerturbation attribute) (wetlab.Donor attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.Experiment attribute) (wetlab.GeneticPerturbation attribute) (wetlab.PerturbationTarget attribute) (wetlab.Techsample attribute) DevelopmentalStage (class in bionty) (class in bionty.base) df (lamindb.core.InspectResult property) df() (bionty.base.BFXPipeline method) (bionty.base.BioSample method) (bionty.base.CellLine method) (bionty.base.CellMarker method) (bionty.base.CellType method) (bionty.base.DevelopmentalStage method) (bionty.base.Disease method) (bionty.base.Drug method) (bionty.base.Ethnicity method) (bionty.base.ExperimentalFactor method) (bionty.base.Gene method) (bionty.base.Organism method) (bionty.base.Pathway method) (bionty.base.Phenotype method) (bionty.base.Protein method) (bionty.base.PublicOntology method) (bionty.base.Tissue method) (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.core.StaticReference method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Source class method) (bionty.Tissue class method) (clinicore.Biosample class method) (clinicore.ClinicalTrial class method) (clinicore.Medication class method) (clinicore.Patient class method) (clinicore.Treatment class method) (lamindb.Artifact class method) (lamindb.Collection class method) (lamindb.core.BasicRecord class method) (lamindb.core.FeatureValue class method) (lamindb.core.ParamValue class method) (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) (lamindb.core.Record class method) (lamindb.core.RecordList method) (lamindb.core.Registry method) (lamindb.Feature class method) (lamindb.Param class method) (lamindb.Person class method) (lamindb.Project class method) (lamindb.Reference class method) (lamindb.Run class method) (lamindb.Schema class method) (lamindb.Storage class method) (lamindb.Transform class method) (lamindb.ULabel class method) (lamindb.User class method) (wetlab.Biologic class method) (wetlab.Biosample class method) (wetlab.CombinationPerturbation class method) (wetlab.Compound class method) (wetlab.CompoundPerturbation class method) (wetlab.Donor class method) (wetlab.EnvironmentalPerturbation class method) (wetlab.Experiment class method) (wetlab.GeneticPerturbation class method) (wetlab.PerturbationTarget class method) (wetlab.Techsample class method) (wetlab.Well class method) df_iris() (in module lamindb.core.datasets) df_iris_in_meter() (in module lamindb.core.datasets) df_iris_in_meter_study1() (in module lamindb.core.datasets) df_iris_in_meter_study2() (in module lamindb.core.datasets) dialect (lamindb.setup.core.InstanceSettings property) diff() (bionty.base.BFXPipeline method) (bionty.base.BioSample method) (bionty.base.CellLine method) (bionty.base.CellMarker method) (bionty.base.CellType method) (bionty.base.DevelopmentalStage method) (bionty.base.Disease method) (bionty.base.Drug method) (bionty.base.Ethnicity method) (bionty.base.ExperimentalFactor method) (bionty.base.Gene method) (bionty.base.Organism method) (bionty.base.Pathway method) (bionty.base.Phenotype method) (bionty.base.Protein method) (bionty.base.PublicOntology method) (bionty.base.Tissue method) (bionty.core.StaticReference method) difference() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) dir_iris_images() (in module lamindb.core.datasets) dir_scrnaseq_cellranger() (in module lamindb.core.datasets) Disease (class in bionty) (class in bionty.base) diseases (clinicore.Biosample attribute) (wetlab.Biosample attribute) (wetlab.Donor attribute) display_available_sources() (in module bionty.base) display_currently_used_sources() (in module bionty.base) distinct() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) django() (in module lamindb.setup) doc_args() (in module lamindb.base) DoesNotExist (lamindb.User attribute) doi (lamindb.Reference attribute) Donor (class in wetlab) dosage (clinicore.Treatment attribute) dosage_unit (clinicore.Treatment attribute) download_to() (lamindb.UPath method) drive (lamindb.UPath property) Drug (class in bionty.base) dtype (lamindb.Feature attribute) (lamindb.Param attribute) (lamindb.Schema attribute) dump() (bionty.base.Ontology method) dumps() (bionty.base.Ontology method) duration (clinicore.Treatment attribute) (wetlab.CompoundPerturbation attribute) (wetlab.EnvironmentalPerturbation attribute) E earliest() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) email (lamindb.Person attribute) (lamindb.setup.core.UserSettings attribute) end_date (lamindb.Project attribute) ensembl_gene_id (bionty.Gene attribute) ensembl_gene_ids (bionty.Protein attribute) entity (bionty.Source attribute) environment (lamindb.Run attribute) environmental_perturbations (wetlab.CombinationPerturbation attribute) EnvironmentalPerturbation (class in wetlab) Ethnicity (class in bionty) (class in bionty.base) ethnicity (clinicore.Patient attribute) (wetlab.Donor attribute) exclude() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) exists() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) (lamindb.UPath method) expanduser() (lamindb.UPath method) Experiment (class in wetlab) ExperimentalFactor (class in bionty) (class in bionty.base) explain() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) extend() (lamindb.core.RecordList method) external (lamindb.Person attribute) extra() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) F FAIR fake_bio_notebook_titles() (in module lamindb.core.datasets) feature Feature (class in lamindb) feature (lamindb.core.FeatureValue attribute) feature_sets (lamindb.Artifact attribute) FeatureDtype (in module lamindb.base.types) FeatureManager (class in lamindb.core) features (lamindb.Artifact attribute) (lamindb.Project attribute) (lamindb.Schema attribute) FeatureSet (in module lamindb) FeatureValue (class in lamindb.core) FieldAttr (in module lamindb.base.types) (in module lamindb.core.fields) fields (bionty.base.BFXPipeline property) (bionty.base.BioSample property) (bionty.base.CellLine property) (bionty.base.CellMarker property) (bionty.base.CellType property) (bionty.base.DevelopmentalStage property) (bionty.base.Disease property) (bionty.base.Drug property) (bionty.base.Ethnicity property) (bionty.base.ExperimentalFactor property) (bionty.base.Gene property) (bionty.base.Organism property) (bionty.base.Pathway property) (bionty.base.Phenotype property) (bionty.base.Protein property) (bionty.base.PublicOntology property) (bionty.base.Tissue property) (bionty.core.StaticReference property) file_bam() (in module lamindb.core.datasets) file_fastq() (in module lamindb.core.datasets) file_fcs() (in module lamindb.core.datasets) file_fcs_alpert19() (in module lamindb.core.datasets) file_jpg_paradisi05() (in module lamindb.core.datasets) file_mini_csv() (in module lamindb.core.datasets) file_tiff_suo22() (in module lamindb.core.datasets) file_tsv_rnaseq_nfcore_salmon_merged_gene_counts() (in module lamindb.core.datasets) filter() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Source class method) (bionty.Tissue class method) (clinicore.Biosample class method) (clinicore.ClinicalTrial class method) (clinicore.Medication class method) (clinicore.Patient class method) (clinicore.Treatment class method) (lamindb.Artifact class method) (lamindb.Collection class method) (lamindb.core.BasicRecord class method) (lamindb.core.FeatureManager class method) (lamindb.core.FeatureValue class method) (lamindb.core.ParamManager class method) (lamindb.core.ParamValue class method) (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) (lamindb.core.Record class method) (lamindb.core.Registry method) (lamindb.Feature class method) (lamindb.Param class method) (lamindb.Person class method) (lamindb.Project class method) (lamindb.Reference class method) (lamindb.Run class method) (lamindb.Schema class method) (lamindb.Storage class method) (lamindb.Transform class method) (lamindb.ULabel class method) (lamindb.User class method) (wetlab.Biologic class method) (wetlab.Biosample class method) (wetlab.CombinationPerturbation class method) (wetlab.Compound class method) (wetlab.CompoundPerturbation class method) (wetlab.Donor class method) (wetlab.EnvironmentalPerturbation class method) (wetlab.Experiment class method) (wetlab.GeneticPerturbation class method) (wetlab.PerturbationTarget class method) (wetlab.Techsample class method) (wetlab.Well class method) finish() (in module lamindb) (lamindb.core.Context method) finished_at (lamindb.Run attribute) first() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) frac_validated (lamindb.core.InspectResult property) from_anndata() (lamindb.Artifact class method) (lamindb.core.AnnDataCatManager class method) (lamindb.core.CatManager class method) (lamindb.core.DataFrameCatManager class method) (lamindb.core.MuDataCatManager class method) (lamindb.core.TiledbsomaCatManager class method) from_df() (lamindb.Artifact class method) (lamindb.core.AnnDataCatManager class method) (lamindb.core.CatManager class method) (lamindb.core.DataFrameCatManager class method) (lamindb.core.MuDataCatManager class method) (lamindb.core.TiledbsomaCatManager class method) (lamindb.Feature class method) (lamindb.Schema class method) from_dir() (lamindb.Artifact class method) from_mudata() (lamindb.Artifact class method) (lamindb.core.AnnDataCatManager class method) (lamindb.core.CatManager class method) (lamindb.core.DataFrameCatManager class method) (lamindb.core.MuDataCatManager class method) (lamindb.core.TiledbsomaCatManager class method) from_obo_library() (bionty.base.Ontology class method) from_public() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Tissue method) (clinicore.Medication method) (wetlab.Compound method) from_queryset() (lamindb.core.QueryManager class method) from_source() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (clinicore.Medication class method) (wetlab.Compound class method) from_spatialdata() (lamindb.core.AnnDataCatManager class method) (lamindb.core.CatManager class method) (lamindb.core.DataFrameCatManager class method) (lamindb.core.MuDataCatManager class method) (lamindb.core.TiledbsomaCatManager class method) from_tiledbsoma() (lamindb.Artifact class method) (lamindb.core.AnnDataCatManager class method) (lamindb.core.CatManager class method) (lamindb.core.DataFrameCatManager class method) (lamindb.core.MuDataCatManager class method) (lamindb.core.TiledbsomaCatManager class method) from_values() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (clinicore.Biosample class method) (clinicore.ClinicalTrial class method) (clinicore.Medication class method) (clinicore.Patient class method) (clinicore.Treatment class method) (lamindb.core.CanCurate class method) (lamindb.Feature class method) (lamindb.Param class method) (lamindb.Person class method) (lamindb.Project class method) (lamindb.Reference class method) (lamindb.Schema class method) (lamindb.ULabel class method) (lamindb.User class method) (wetlab.Biologic class method) (wetlab.Biosample class method) (wetlab.CombinationPerturbation class method) (wetlab.Compound class method) (wetlab.CompoundPerturbation class method) (wetlab.Donor class method) (wetlab.EnvironmentalPerturbation class method) (wetlab.Experiment class method) (wetlab.GeneticPerturbation class method) (wetlab.PerturbationTarget class method) (wetlab.Techsample class method) (wetlab.Well class method) fs (lamindb.UPath property) G gender (clinicore.Patient attribute) GENDER_CHOICES (clinicore.Patient attribute) Gene (class in bionty) (class in bionty.base) gene_symbol (bionty.CellMarker attribute) (bionty.Protein attribute) genes (bionty.Pathway attribute) (wetlab.PerturbationTarget attribute) genetic_perturbations (wetlab.CombinationPerturbation attribute) GeneticPerturbation (class in wetlab) GeneticPerturbationSystem (in module wetlab) get() (bionty.base.Ontology method) (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Source class method) (bionty.Tissue class method) (clinicore.Biosample class method) (clinicore.ClinicalTrial class method) (clinicore.Medication class method) (clinicore.Patient class method) (clinicore.Treatment class method) (lamindb.Artifact class method) (lamindb.Collection class method) (lamindb.core.BasicRecord class method) (lamindb.core.FeatureManager class method) (lamindb.core.FeatureValue class method) (lamindb.core.LabelManager method) (lamindb.core.ParamValue class method) (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) (lamindb.core.Record class method) (lamindb.core.Registry method) (lamindb.Feature class method) (lamindb.Param class method) (lamindb.Person class method) (lamindb.Project class method) (lamindb.Reference class method) (lamindb.Run class method) (lamindb.Schema class method) (lamindb.Storage class method) (lamindb.Transform class method) (lamindb.ULabel class method) (lamindb.User class method) (wetlab.Biologic class method) (wetlab.Biosample class method) (wetlab.CombinationPerturbation class method) (wetlab.Compound class method) (wetlab.CompoundPerturbation class method) (wetlab.Donor class method) (wetlab.EnvironmentalPerturbation class method) (wetlab.Experiment class method) (wetlab.GeneticPerturbation class method) (wetlab.PerturbationTarget class method) (wetlab.Techsample class method) (wetlab.Well class method) get_gender_display() (clinicore.Patient method) get_label_weights() (lamindb.core.MappedCollection method) get_merged_categories() (lamindb.core.MappedCollection method) get_merged_labels() (lamindb.core.MappedCollection method) get_or_create() (lamindb.core.FeatureValue class method) (lamindb.core.ParamValue class method) (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) get_queryset() (lamindb.core.QueryManager method) get_relationship() (bionty.base.Ontology method) get_status_display() (clinicore.Treatment method) get_synonym_type() (bionty.base.Ontology method) get_term() (bionty.base.Ontology method) get_values() (lamindb.core.FeatureManager method) (lamindb.core.ParamManager method) git_repo (lamindb.setup.core.InstanceSettings property) glob() (lamindb.UPath method) group() (lamindb.UPath method) H handle (lamindb.setup.core.UserSettings attribute) hardlink_to() (lamindb.UPath method) hash (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.core.FeatureValue attribute) (lamindb.core.ParamValue attribute) (lamindb.Schema attribute) (lamindb.Transform attribute) HasParents (class in lamindb.core) home() (lamindb.UPath class method) I id (lamindb.setup.core.StorageSettings property) (lamindb.setup.core.UserSettings property) import_from_source() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Tissue method) (clinicore.Medication method) (wetlab.Compound method) import_source() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (clinicore.Medication class method) (wetlab.Compound class method) in_bulk() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) in_db (bionty.Source attribute) index() (lamindb.core.RecordList method) init() (in module lamindb.setup) initiated_by_run (lamindb.Run attribute) initiated_runs (lamindb.Run attribute) input_artifacts (lamindb.Run attribute) input_collections (lamindb.Run attribute) input_of_runs (lamindb.Artifact attribute) (lamindb.Collection attribute) insert() (lamindb.core.RecordList method) inspect() (bionty.base.BFXPipeline method) (bionty.base.BioSample method) (bionty.base.CellLine method) (bionty.base.CellMarker method) (bionty.base.CellType method) (bionty.base.DevelopmentalStage method) (bionty.base.Disease method) (bionty.base.Drug method) (bionty.base.Ethnicity method) (bionty.base.ExperimentalFactor method) (bionty.base.Gene method) (bionty.base.Organism method) (bionty.base.Pathway method) (bionty.base.Phenotype method) (bionty.base.Protein method) (bionty.base.PublicOntology method) (bionty.base.Tissue method) (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.core.StaticReference method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (clinicore.Biosample class method) (clinicore.ClinicalTrial class method) (clinicore.Medication class method) (clinicore.Patient class method) (clinicore.Treatment class method) (lamindb.core.CanCurate class method) (lamindb.core.QuerySet method) (lamindb.Feature class method) (lamindb.Param class method) (lamindb.Person class method) (lamindb.Project class method) (lamindb.Reference class method) (lamindb.Schema class method) (lamindb.ULabel class method) (lamindb.User class method) (wetlab.Biologic class method) (wetlab.Biosample class method) (wetlab.CombinationPerturbation class method) (wetlab.Compound class method) (wetlab.CompoundPerturbation class method) (wetlab.Donor class method) (wetlab.EnvironmentalPerturbation class method) (wetlab.Experiment class method) (wetlab.GeneticPerturbation class method) (wetlab.PerturbationTarget class method) (wetlab.Techsample class method) (wetlab.Well class method) InspectResult (class in lamindb.core) instance (lamindb.setup.core.SetupSettings property) instance_uid (lamindb.Storage attribute) InstanceSettings (class in lamindb.setup.core) instrument (bionty.ExperimentalFactor attribute) IntegrityError intersection() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) InvalidArgument is_absolute() (lamindb.UPath method) is_block_device() (lamindb.UPath method) is_char_device() (lamindb.UPath method) is_dir() (lamindb.UPath method) is_fifo() (lamindb.UPath method) is_file() (lamindb.UPath method) is_junction() (lamindb.UPath method) is_latest (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.Transform attribute) is_mount() (lamindb.UPath method) is_on_hub (lamindb.setup.core.InstanceSettings property) (lamindb.setup.core.StorageSettings property) is_relative_to() (lamindb.UPath method) is_remote (lamindb.setup.core.InstanceSettings property) is_reserved() (lamindb.UPath method) is_socket() (lamindb.UPath method) is_symlink() (lamindb.UPath method) is_type (lamindb.Feature attribute) (lamindb.Param attribute) (lamindb.Project attribute) (lamindb.Reference attribute) (lamindb.Schema attribute) (lamindb.ULabel attribute) IsVersioned (class in lamindb.core) items() (bionty.base.Ontology method) iterator() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) iterdir() (lamindb.UPath method) itype (lamindb.Schema attribute) J joinpath() (lamindb.UPath method) joinuri() (lamindb.UPath method) K keep_artifacts_local (lamindb.setup.core.InstanceSettings property) key (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.Transform attribute) key_to_filepath() (lamindb.setup.core.StorageSettings method) keys() (bionty.base.Ontology method) kind (lamindb.Artifact attribute) L label LabelManager (class in lamindb.core) labels (lamindb.Artifact property) lakehouse lamindb module lamindb.base module lamindb.base.types module lamindb.core module lamindb.core.datasets module lamindb.core.fields module lamindb.core.loaders module lamindb.core.storage module lamindb.core.subsettings module lamindb.curators module lamindb.errors module lamindb.integrations module lamindb.setup module lamindb.setup.core module last() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) latest() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) latest_run (lamindb.Transform property) latest_version() (lamindb.core.QuerySet method) lchmod() (lamindb.UPath method) length (bionty.Protein attribute) list() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) ListLike (in module lamindb.base.types) load() (lamindb.Artifact method) (lamindb.Collection method) load_fcs() (in module lamindb.core.loaders) load_h5ad() (in module lamindb.core.loaders) load_h5mu() (in module lamindb.core.loaders) load_html() (in module lamindb.core.loaders) load_image() (in module lamindb.core.loaders) load_json() (in module lamindb.core.loaders) load_svg() (in module lamindb.core.loaders) load_tsv() (in module lamindb.core.loaders) local_filepath() (lamindb.setup.core.StorageSettings method) logger (in module lamindb.core) login() (in module lamindb.setup) logout() (in module lamindb.setup) lookup() (bionty.base.BFXPipeline method) (bionty.base.BioSample method) (bionty.base.CellLine method) (bionty.base.CellMarker method) (bionty.base.CellType method) (bionty.base.DevelopmentalStage method) (bionty.base.Disease method) (bionty.base.Drug method) (bionty.base.Ethnicity method) (bionty.base.ExperimentalFactor method) (bionty.base.Gene method) (bionty.base.Organism method) (bionty.base.Pathway method) (bionty.base.Phenotype method) (bionty.base.Protein method) (bionty.base.PublicOntology method) (bionty.base.Tissue method) (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.core.StaticReference method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Source class method) (bionty.Tissue class method) (clinicore.Biosample class method) (clinicore.ClinicalTrial class method) (clinicore.Medication class method) (clinicore.Patient class method) (clinicore.Treatment class method) (lamindb.Artifact class method) (lamindb.Collection class method) (lamindb.core.AnnDataCatManager method) (lamindb.core.BasicRecord class method) (lamindb.core.DataFrameCatManager method) (lamindb.core.FeatureValue class method) (lamindb.core.MuDataCatManager method) (lamindb.core.ParamValue class method) (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) (lamindb.core.Record class method) (lamindb.core.Registry method) (lamindb.core.TiledbsomaCatManager method) (lamindb.Feature class method) (lamindb.Param class method) (lamindb.Person class method) (lamindb.Project class method) (lamindb.Reference class method) (lamindb.Run class method) (lamindb.Schema class method) (lamindb.Storage class method) (lamindb.Transform class method) (lamindb.ULabel class method) (lamindb.User class method) (wetlab.Biologic class method) (wetlab.Biosample class method) (wetlab.CombinationPerturbation class method) (wetlab.Compound class method) (wetlab.CompoundPerturbation class method) (wetlab.Donor class method) (wetlab.EnvironmentalPerturbation class method) (wetlab.Experiment class method) (wetlab.GeneticPerturbation class method) (wetlab.PerturbationTarget class method) (wetlab.Techsample class method) (wetlab.Well class method) lstat() (lamindb.UPath method) M make_external() (lamindb.core.FeatureManager method) (lamindb.core.LabelManager method) map_legacy_ids() (bionty.base.Gene method) map_synonyms() (bionty.base.BFXPipeline method) (bionty.base.BioSample method) (bionty.base.CellLine method) (bionty.base.CellMarker method) (bionty.base.CellType method) (bionty.base.DevelopmentalStage method) (bionty.base.Disease method) (bionty.base.Drug method) (bionty.base.Ethnicity method) (bionty.base.ExperimentalFactor method) (bionty.base.Gene method) (bionty.base.Organism method) (bionty.base.Pathway method) (bionty.base.Phenotype method) (bionty.base.Protein method) (bionty.base.PublicOntology method) (bionty.base.Tissue method) (bionty.core.StaticReference method) mapped() (lamindb.Collection method) MappedCollection (class in lamindb.core) match() (lamindb.UPath method) maximal_set (lamindb.Schema attribute) md5 (bionty.Source attribute) measurement (bionty.ExperimentalFactor attribute) Medication (class in clinicore) medication (clinicore.Treatment attribute) medications (clinicore.Biosample attribute) members (lamindb.Schema property) (wetlab.CombinationPerturbation property) Meta (lamindb.core.BasicRecord attribute) (lamindb.core.IsVersioned attribute) (lamindb.core.TracksRun attribute) (lamindb.core.TracksUpdates attribute) (lamindb.User attribute) meta_artifact (lamindb.Collection attribute) migrate (class in lamindb.setup) minimal_set (lamindb.Schema attribute) MissingContextUID mkdir() (lamindb.UPath method) modified (lamindb.UPath property) module bionty bionty.base bionty.core clinicore lamindb lamindb.base lamindb.base.types lamindb.core lamindb.core.datasets lamindb.core.fields lamindb.core.loaders lamindb.core.storage lamindb.core.subsettings lamindb.curators lamindb.errors lamindb.integrations lamindb.setup lamindb.setup.core wetlab modules (lamindb.setup.core.InstanceSettings property) molecule (bionty.ExperimentalFactor attribute) mudata_papalexi21_subset() (in module lamindb.core.datasets) MuDataCatManager (class in lamindb.core) N n (lamindb.Schema attribute) n_empty (lamindb.core.InspectResult property) n_files (lamindb.Artifact attribute) n_observations (lamindb.Artifact attribute) n_unique (lamindb.core.InspectResult property) name (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (clinicore.Biosample attribute) (clinicore.ClinicalTrial attribute) (clinicore.Medication attribute) (clinicore.Patient attribute) (clinicore.Treatment attribute) (lamindb.Collection property) (lamindb.Feature attribute) (lamindb.Param attribute) (lamindb.Person attribute) (lamindb.Project attribute) (lamindb.Reference attribute) (lamindb.Run attribute) (lamindb.Schema attribute) (lamindb.setup.core.InstanceSettings property) (lamindb.setup.core.UserSettings attribute) (lamindb.Transform property) (lamindb.ULabel attribute) (lamindb.UPath property) (wetlab.Biologic attribute) (wetlab.Biosample attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.CompoundPerturbation attribute) (wetlab.Donor attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.Experiment attribute) (wetlab.GeneticPerturbation attribute) (wetlab.PerturbationTarget attribute) (wetlab.Techsample attribute) (wetlab.Well attribute) ncbi_gene_id (bionty.CellMarker attribute) ncbi_gene_ids (bionty.Gene attribute) non_validated (lamindb.core.AnnDataCatManager property) (lamindb.core.CatManager property) (lamindb.core.DataFrameCatManager property) (lamindb.core.InspectResult property) (lamindb.core.MuDataCatManager property) (lamindb.core.TiledbsomaCatManager property) none() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) NotebookNotSaved nullable (lamindb.Feature property) O objective (clinicore.ClinicalTrial attribute) objects (lamindb.User attribute) obs_names (lamindb.core.storage.AnnDataAccessor property) observation off_target_score (wetlab.GeneticPerturbation attribute) on_target_score (wetlab.GeneticPerturbation attribute) one() (lamindb.core.QuerySet method) (lamindb.core.RecordList method) one_or_none() (lamindb.core.QuerySet method) only() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) Ontology (class in bionty.base) ontology_id (bionty.CellLine attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Tissue attribute) (clinicore.Medication attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.EnvironmentalPerturbation attribute) open() (lamindb.Artifact method) (lamindb.Collection method) (lamindb.UPath method) order_by() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) ordered (lamindb.core.QuerySet property) ordered_artifacts (lamindb.Collection property) ordered_set (lamindb.Schema attribute) organism (bionty.base.BFXPipeline property) (bionty.base.BioSample property) (bionty.base.CellLine property) (bionty.base.CellMarker property) (bionty.base.CellType property) (bionty.base.DevelopmentalStage property) (bionty.base.Disease property) (bionty.base.Drug property) (bionty.base.Ethnicity property) (bionty.base.ExperimentalFactor property) (bionty.base.Gene property) (bionty.base.Organism property) (bionty.base.Pathway property) (bionty.base.Phenotype property) (bionty.base.Protein property) (bionty.base.PublicOntology property) (bionty.base.Tissue property) (bionty.CellMarker attribute) (bionty.core.Settings property) (bionty.core.StaticReference property) (bionty.Gene attribute) (bionty.Protein attribute) (bionty.Source attribute) Organism (class in bionty) (class in bionty.base) organism (wetlab.Biosample attribute) (wetlab.Donor attribute) original_shapes (lamindb.core.MappedCollection property) ORM otype (lamindb.Artifact attribute) (lamindb.Schema attribute) output_artifacts (lamindb.Run attribute) output_collections (lamindb.Run attribute) owner (lamindb.setup.core.InstanceSettings property) owner() (lamindb.UPath method) P Param (class in lamindb) param (lamindb.core.ParamValue attribute) ParamManager (class in lamindb.core) params (lamindb.Artifact attribute) (lamindb.Run attribute) (lamindb.Schema attribute) ParamValue (class in lamindb.core) parent (lamindb.UPath property) parents (bionty.CellLine attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Tissue attribute) (clinicore.Medication attribute) (lamindb.Project attribute) (lamindb.ULabel attribute) (lamindb.UPath property) (wetlab.Compound attribute) parts (lamindb.UPath property) password (lamindb.setup.core.UserSettings attribute) path (lamindb.Artifact property) (lamindb.Storage property) (lamindb.UPath property) paths (lamindb.setup.core.SetupSettings property) Pathway (class in bionty) (class in bionty.base) pathways (wetlab.PerturbationTarget attribute) Patient (class in clinicore) patient (clinicore.Biosample attribute) people (lamindb.Project attribute) Person (class in lamindb) PerturbationTarget (class in wetlab) Phenotype (class in bionty) (class in bionty.base) pk (lamindb.core.BasicRecord property) (lamindb.core.IsVersioned property) (lamindb.core.TracksRun property) (lamindb.core.TracksUpdates property) (lamindb.User property) pop() (lamindb.core.RecordList method) predecessors (lamindb.Project attribute) (lamindb.Transform attribute) prefetch_related() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) private_django_api (lamindb.setup.core.SetupSettings property) Project (class in lamindb) projects (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.Feature attribute) (lamindb.Person attribute) (lamindb.Reference attribute) (lamindb.Schema attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) Protein (class in bionty) (class in bionty.base) proteins (wetlab.Biologic attribute) (wetlab.PerturbationTarget attribute) protocol (lamindb.UPath property) proxy_dtype (lamindb.Feature attribute) public() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (clinicore.Medication class method) (wetlab.Compound class method) PublicOntology (class in bionty.base) PublicOntologyField (class in bionty.base) pubmed_id (lamindb.Reference attribute) Q query (lamindb.core.QuerySet property) query_children() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Tissue method) (clinicore.Medication method) (lamindb.core.HasParents method) (lamindb.ULabel method) (wetlab.Compound method) query_parents() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Tissue method) (clinicore.Medication method) (lamindb.core.HasParents method) (lamindb.ULabel method) (wetlab.Compound method) QueryManager (class in lamindb.core) QuerySet (class in lamindb.core) R raw() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) read_bytes() (lamindb.UPath method) read_text() (lamindb.UPath method) readlink() (lamindb.UPath method) record Record (class in lamindb.core) record (lamindb.setup.core.StorageSettings property) RecordList (class in lamindb.core) RecordNameChangeIntegrityError records (lamindb.Feature attribute) (lamindb.Param attribute) (lamindb.Project attribute) (lamindb.Reference attribute) (lamindb.Schema attribute) (lamindb.ULabel attribute) Reference (class in lamindb) reference (lamindb.Collection attribute) (lamindb.Run attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) reference_type (lamindb.Collection attribute) (lamindb.Run attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) references (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.Person attribute) (lamindb.Project attribute) (lamindb.Transform attribute) region (lamindb.setup.core.StorageSettings property) (lamindb.Storage attribute) Registry (class in lamindb.core) relationships() (bionty.base.Ontology method) relative_to() (lamindb.UPath method) remove() (lamindb.core.RecordList method) remove_synonym() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Tissue method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (lamindb.core.CanCurate method) (lamindb.Feature method) (lamindb.Param method) (lamindb.Person method) (lamindb.Project method) (lamindb.Reference method) (lamindb.Schema method) (lamindb.ULabel method) (lamindb.User method) (wetlab.Biologic method) (wetlab.Biosample method) (wetlab.CombinationPerturbation method) (wetlab.Compound method) (wetlab.CompoundPerturbation method) (wetlab.Donor method) (wetlab.EnvironmentalPerturbation method) (wetlab.Experiment method) (wetlab.GeneticPerturbation method) (wetlab.PerturbationTarget method) (wetlab.Techsample method) (wetlab.Well method) remove_values() (lamindb.core.FeatureManager method) rename() (lamindb.UPath method) replace() (lamindb.Artifact method) (lamindb.UPath method) report (lamindb.Run attribute) reset_sources() (in module bionty.base) resolve() (lamindb.UPath method) resolve_expression() (lamindb.core.QuerySet method) restore() (lamindb.Artifact method) (lamindb.Collection method) reverse() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) (lamindb.core.RecordList method) rglob() (lamindb.UPath method) rmdir() (lamindb.UPath method) root (lamindb.setup.core.StorageSettings property) (lamindb.Storage attribute) (lamindb.UPath property) root_as_str (lamindb.setup.core.StorageSettings property) route (clinicore.Treatment attribute) row (wetlab.Well attribute) run (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) Run (class in lamindb) run (clinicore.Biosample attribute) (clinicore.ClinicalTrial attribute) (clinicore.Medication attribute) (clinicore.Patient attribute) (clinicore.Treatment attribute) (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.core.Context property) (lamindb.core.FeatureValue attribute) (lamindb.core.TracksRun attribute) (lamindb.Feature attribute) (lamindb.Param attribute) (lamindb.Person attribute) (lamindb.Project attribute) (lamindb.Reference attribute) (lamindb.Schema attribute) (lamindb.Storage attribute) (lamindb.ULabel attribute) (wetlab.Biologic attribute) (wetlab.Biosample attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.CompoundPerturbation attribute) (wetlab.Donor attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.Experiment attribute) (wetlab.GeneticPerturbation attribute) (wetlab.PerturbationTarget attribute) (wetlab.Techsample attribute) (wetlab.Well attribute) run_id (lamindb.core.TracksRun attribute) runs (lamindb.core.ParamValue attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) S samefile() (lamindb.UPath method) sample save() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (in module lamindb) (lamindb.Artifact method) (lamindb.Collection method) (lamindb.core.BasicRecord method) (lamindb.core.FeatureValue method) (lamindb.core.IsVersioned method) (lamindb.core.ParamValue method) (lamindb.core.Record method) (lamindb.core.RecordList method) (lamindb.core.TracksRun method) (lamindb.core.TracksUpdates method) (lamindb.Feature method) (lamindb.Param method) (lamindb.Person method) (lamindb.Project method) (lamindb.Reference method) (lamindb.Run method) (lamindb.Schema method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (wetlab.Biologic method) (wetlab.Biosample method) (wetlab.CombinationPerturbation method) (wetlab.Compound method) (wetlab.CompoundPerturbation method) (wetlab.Donor method) (wetlab.EnvironmentalPerturbation method) (wetlab.Experiment method) (wetlab.GeneticPerturbation method) (wetlab.PerturbationTarget method) (wetlab.Techsample method) (wetlab.Well method) save_artifact() (lamindb.core.AnnDataCatManager method) (lamindb.core.CatManager method) (lamindb.core.DataFrameCatManager method) (lamindb.core.MuDataCatManager method) (lamindb.core.TiledbsomaCatManager method) (lamindb.curators.AnnDataCurator method) (lamindb.curators.Curator method) (lamindb.curators.DataFrameCurator method) save_tiledbsoma_experiment() (in module lamindb.integrations) save_vitessce_config() (in module lamindb.integrations) Schema (class in lamindb) schema (lamindb.Artifact attribute) schemas (bionty.CellMarker attribute) (bionty.Gene attribute) (bionty.Pathway attribute) (bionty.Protein attribute) (lamindb.Feature attribute) (lamindb.Param attribute) (lamindb.Project attribute) schmidt22_crispra_gws_IFNG() (in module lamindb.core.datasets) schmidt22_perturbseq() (in module lamindb.core.datasets) scientific_name (bionty.Organism attribute) search() (bionty.base.BFXPipeline method) (bionty.base.BioSample method) (bionty.base.CellLine method) (bionty.base.CellMarker method) (bionty.base.CellType method) (bionty.base.DevelopmentalStage method) (bionty.base.Disease method) (bionty.base.Drug method) (bionty.base.Ethnicity method) (bionty.base.ExperimentalFactor method) (bionty.base.Gene method) (bionty.base.Organism method) (bionty.base.Pathway method) (bionty.base.Phenotype method) (bionty.base.Protein method) (bionty.base.PublicOntology method) (bionty.base.Tissue method) (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.core.StaticReference method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Source class method) (bionty.Tissue class method) (clinicore.Biosample class method) (clinicore.ClinicalTrial class method) (clinicore.Medication class method) (clinicore.Patient class method) (clinicore.Treatment class method) (lamindb.Artifact class method) (lamindb.Collection class method) (lamindb.core.BasicRecord class method) (lamindb.core.FeatureValue class method) (lamindb.core.ParamValue class method) (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) (lamindb.core.Record class method) (lamindb.core.Registry method) (lamindb.Feature class method) (lamindb.Param class method) (lamindb.Person class method) (lamindb.Project class method) (lamindb.Reference class method) (lamindb.Run class method) (lamindb.Schema class method) (lamindb.Storage class method) (lamindb.Transform class method) (lamindb.ULabel class method) (lamindb.User class method) (wetlab.Biologic class method) (wetlab.Biosample class method) (wetlab.CombinationPerturbation class method) (wetlab.Compound class method) (wetlab.CompoundPerturbation class method) (wetlab.Donor class method) (wetlab.EnvironmentalPerturbation class method) (wetlab.Experiment class method) (wetlab.GeneticPerturbation class method) (wetlab.PerturbationTarget class method) (wetlab.Techsample class method) (wetlab.Well class method) search_names (lamindb.core.subsettings.CreationSettings attribute) select_for_update() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) select_related() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) sequence (wetlab.GeneticPerturbation attribute) set_abbr() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Tissue method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (lamindb.core.CanCurate method) (lamindb.Feature method) (lamindb.Param method) (lamindb.Person method) (lamindb.Project method) (lamindb.Reference method) (lamindb.Schema method) (lamindb.ULabel method) (lamindb.User method) (wetlab.Biologic method) (wetlab.Biosample method) (wetlab.CombinationPerturbation method) (wetlab.Compound method) (wetlab.CompoundPerturbation method) (wetlab.Donor method) (wetlab.EnvironmentalPerturbation method) (wetlab.Experiment method) (wetlab.GeneticPerturbation method) (wetlab.PerturbationTarget method) (wetlab.Techsample method) (wetlab.Well method) set_as_currently_used() (bionty.Source method) set_latest_sources_as_currently_used() (in module bionty.core) Settings (class in bionty.core) (class in lamindb.core) settings (in module bionty) (in module bionty.base) (in module lamindb) (in module lamindb.setup) settings_dir (lamindb.setup.core.SetupSettings property) SetupSettings (class in lamindb.setup.core) sex (wetlab.Donor attribute) shape (lamindb.core.MappedCollection property) show() (lamindb.setup.migrate class method) SIMPLE (lamindb.core.storage.VALID_SUFFIXES attribute) site (clinicore.Treatment attribute) size (lamindb.Artifact attribute) slot (lamindb.Schema attribute) slug (lamindb.setup.core.InstanceSettings property) small_dataset1() (in module lamindb.core.datasets) small_dataset2() (in module lamindb.core.datasets) sort() (lamindb.core.RecordList method) source (bionty.base.BFXPipeline property) (bionty.base.BioSample property) (bionty.base.CellLine property) (bionty.base.CellMarker property) (bionty.base.CellType property) (bionty.base.DevelopmentalStage property) (bionty.base.Disease property) (bionty.base.Drug property) (bionty.base.Ethnicity property) (bionty.base.ExperimentalFactor property) (bionty.base.Gene property) (bionty.base.Organism property) (bionty.base.Pathway property) (bionty.base.Phenotype property) (bionty.base.Protein property) (bionty.base.PublicOntology property) (bionty.base.Tissue property) (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.core.BioRecord attribute) (bionty.core.StaticReference property) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Tissue attribute) Source (class in bionty) source (clinicore.Medication attribute) (wetlab.Compound attribute) source_code (lamindb.Transform attribute) source_website (bionty.Source attribute) space (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.core.BioRecord attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (clinicore.Biosample attribute) (clinicore.ClinicalTrial attribute) (clinicore.Medication attribute) (clinicore.Patient attribute) (clinicore.Treatment attribute) (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.core.FeatureValue attribute) (lamindb.core.ParamValue attribute) (lamindb.core.Record attribute) (lamindb.Feature attribute) (lamindb.Param attribute) (lamindb.Person attribute) (lamindb.Project attribute) (lamindb.Reference attribute) (lamindb.Run attribute) (lamindb.Schema attribute) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (wetlab.Biologic attribute) (wetlab.Biosample attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.CompoundPerturbation attribute) (wetlab.Donor attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.Experiment attribute) (wetlab.GeneticPerturbation attribute) (wetlab.PerturbationTarget attribute) (wetlab.Techsample attribute) (wetlab.Well attribute) squash() (lamindb.setup.migrate class method) stable_id (bionty.Gene attribute) standardize() (bionty.base.BFXPipeline method) (bionty.base.BioSample method) (bionty.base.CellLine method) (bionty.base.CellMarker method) (bionty.base.CellType method) (bionty.base.DevelopmentalStage method) (bionty.base.Disease method) (bionty.base.Drug method) (bionty.base.Ethnicity method) (bionty.base.ExperimentalFactor method) (bionty.base.Gene method) (bionty.base.Organism method) (bionty.base.Pathway method) (bionty.base.Phenotype method) (bionty.base.Protein method) (bionty.base.PublicOntology method) (bionty.base.Tissue method) (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.core.StaticReference method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (clinicore.Biosample class method) (clinicore.ClinicalTrial class method) (clinicore.Medication class method) (clinicore.Patient class method) (clinicore.Treatment class method) (lamindb.core.AnnDataCatManager method) (lamindb.core.CanCurate class method) (lamindb.core.CatManager method) (lamindb.core.DataFrameCatManager method) (lamindb.core.MuDataCatManager method) (lamindb.core.QuerySet method) (lamindb.core.TiledbsomaCatManager method) (lamindb.curators.DataFrameCurator method) (lamindb.Feature class method) (lamindb.Param class method) (lamindb.Person class method) (lamindb.Project class method) (lamindb.Reference class method) (lamindb.Schema class method) (lamindb.ULabel class method) (lamindb.User class method) (wetlab.Biologic class method) (wetlab.Biosample class method) (wetlab.CombinationPerturbation class method) (wetlab.Compound class method) (wetlab.CompoundPerturbation class method) (wetlab.Donor class method) (wetlab.EnvironmentalPerturbation class method) (wetlab.Experiment class method) (wetlab.GeneticPerturbation class method) (wetlab.PerturbationTarget class method) (wetlab.Techsample class method) (wetlab.Well class method) start_date (lamindb.Project attribute) started_at (lamindb.Run attribute) stat() (lamindb.UPath method) StaticReference (class in bionty.core) status (clinicore.Treatment attribute) STATUS_CHOICES (clinicore.Treatment attribute) stem (lamindb.UPath property) stem_uid (lamindb.Artifact property) (lamindb.Collection property) (lamindb.core.IsVersioned property) (lamindb.Transform property) Storage (class in lamindb) storage (lamindb.Artifact attribute) (lamindb.core.Settings property) (lamindb.setup.core.InstanceSettings property) (lamindb.setup.core.SetupSettings property) storage_local (lamindb.core.Settings property) (lamindb.setup.core.InstanceSettings property) storage_options (lamindb.UPath property) StorageSettings (class in lamindb.setup.core) StrField (in module lamindb.base.types) successors (lamindb.Project attribute) (lamindb.Transform attribute) suffix (lamindb.Artifact attribute) (lamindb.UPath property) suffixes (lamindb.UPath property) SUPPORTED_SUFFIXES (in module lamindb.core.loaders) symbol (bionty.Gene attribute) symlink_to() (lamindb.UPath method) sync_all_sources_to_latest() (in module bionty.core) sync_git_repo (lamindb.core.Settings property) synchronize() (lamindb.UPath method) synonym_types() (bionty.base.Ontology method) synonyms (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Tissue attribute) (clinicore.Medication attribute) (lamindb.Feature attribute) (wetlab.Biologic attribute) (wetlab.Compound attribute) synonyms_mapper (lamindb.core.InspectResult property) system (wetlab.GeneticPerturbation attribute) T targets (wetlab.Biologic attribute) (wetlab.CompoundPerturbation attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.GeneticPerturbation attribute) Techsample (class in wetlab) terms() (bionty.base.Ontology method) text (lamindb.Reference attribute) TiledbsomaCatManager (class in lamindb.core) Tissue (class in bionty) (class in bionty.base) tissues (clinicore.Biosample attribute) (wetlab.Biosample attribute) title (clinicore.ClinicalTrial attribute) to_df() (bionty.base.Ontology method) to_dict() (lamindb.core.storage.AnnDataAccessor method) to_memory() (lamindb.core.storage.AnnDataAccessor method) to_pronto() (bionty.base.BFXPipeline method) (bionty.base.BioSample method) (bionty.base.CellLine method) (bionty.base.CellMarker method) (bionty.base.CellType method) (bionty.base.DevelopmentalStage method) (bionty.base.Disease method) (bionty.base.Drug method) (bionty.base.Ethnicity method) (bionty.base.ExperimentalFactor method) (bionty.base.Gene method) (bionty.base.Organism method) (bionty.base.Pathway method) (bionty.base.Phenotype method) (bionty.base.Protein method) (bionty.base.PublicOntology method) (bionty.base.Tissue method) (bionty.core.StaticReference method) to_url() (lamindb.UPath method) touch() (lamindb.UPath method) track() (in module lamindb) (lamindb.core.Context method) track_run_inputs (lamindb.core.Settings attribute) tracked() (in module lamindb) TracksRun (class in lamindb.core) TracksUpdates (class in lamindb.core) Transform (class in lamindb) transform (lamindb.Artifact property) (lamindb.Collection property) (lamindb.core.Context property) (lamindb.Run attribute) transforms (lamindb.Project attribute) (lamindb.Reference attribute) (lamindb.ULabel attribute) TransformType (in module lamindb.base.types) Treatment (class in clinicore) type (lamindb.Feature attribute) (lamindb.Param attribute) (lamindb.Project attribute) (lamindb.Reference attribute) (lamindb.Schema attribute) (lamindb.setup.core.StorageSettings property) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (wetlab.Biologic attribute) type_is_cloud (lamindb.setup.core.StorageSettings property) U UI uid (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (clinicore.Biosample attribute) (clinicore.ClinicalTrial attribute) (clinicore.Medication attribute) (clinicore.Patient attribute) (clinicore.Treatment attribute) (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.core.Context property) (lamindb.Feature attribute) (lamindb.Person attribute) (lamindb.Project attribute) (lamindb.Reference attribute) (lamindb.Run attribute) (lamindb.Schema attribute) (lamindb.setup.core.InstanceSettings property) (lamindb.setup.core.StorageSettings property) (lamindb.setup.core.UserSettings attribute) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (wetlab.Biologic attribute) (wetlab.Biosample attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.CompoundPerturbation attribute) (wetlab.Donor attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.Experiment attribute) (wetlab.GeneticPerturbation attribute) (wetlab.PerturbationTarget attribute) (wetlab.Techsample attribute) (wetlab.Well attribute) ULabel (class in lamindb) ulabels (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.Project attribute) (lamindb.Run attribute) (lamindb.Transform attribute) union() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) uniprotkb_id (bionty.CellMarker attribute) (bionty.Protein attribute) unit (lamindb.Feature attribute) (wetlab.EnvironmentalPerturbation attribute) unlink() (lamindb.UPath method) UPath (class in lamindb) UPathStr (in module lamindb.base.types) update() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) update_or_create() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) UpdateContext updated_at (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (clinicore.Biosample attribute) (clinicore.ClinicalTrial attribute) (clinicore.Medication attribute) (clinicore.Patient attribute) (clinicore.Treatment attribute) (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.Feature attribute) (lamindb.Param attribute) (lamindb.Person attribute) (lamindb.Project attribute) (lamindb.Reference attribute) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (wetlab.Biologic attribute) (wetlab.Biosample attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.CompoundPerturbation attribute) (wetlab.Donor attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.Experiment attribute) (wetlab.GeneticPerturbation attribute) (wetlab.PerturbationTarget attribute) (wetlab.Techsample attribute) (wetlab.Well attribute) upload_from() (lamindb.UPath method) url (bionty.Source attribute) (lamindb.Project attribute) (lamindb.Reference attribute) use_in_migrations (lamindb.core.QueryManager attribute) User (class in lamindb) user (lamindb.setup.core.SetupSettings property) UserSettings (class in lamindb.setup.core) using() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Source class method) (bionty.Tissue class method) (clinicore.Biosample class method) (clinicore.ClinicalTrial class method) (clinicore.Medication class method) (clinicore.Patient class method) (clinicore.Treatment class method) (lamindb.Artifact class method) (lamindb.Collection class method) (lamindb.core.BasicRecord class method) (lamindb.core.FeatureValue class method) (lamindb.core.ParamValue class method) (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) (lamindb.core.Record class method) (lamindb.core.Registry method) (lamindb.Feature class method) (lamindb.Param class method) (lamindb.Person class method) (lamindb.Project class method) (lamindb.Reference class method) (lamindb.Run class method) (lamindb.Schema class method) (lamindb.Storage class method) (lamindb.Transform class method) (lamindb.ULabel class method) (lamindb.User class method) (wetlab.Biologic class method) (wetlab.Biosample class method) (wetlab.CombinationPerturbation class method) (wetlab.Compound class method) (wetlab.CompoundPerturbation class method) (wetlab.Donor class method) (wetlab.EnvironmentalPerturbation class method) (wetlab.Experiment class method) (wetlab.GeneticPerturbation class method) (wetlab.PerturbationTarget class method) (wetlab.Techsample class method) (wetlab.Well class method) V VALID_SUFFIXES (class in lamindb.core.storage) validate() (bionty.base.BFXPipeline method) (bionty.base.BioSample method) (bionty.base.CellLine method) (bionty.base.CellMarker method) (bionty.base.CellType method) (bionty.base.DevelopmentalStage method) (bionty.base.Disease method) (bionty.base.Drug method) (bionty.base.Ethnicity method) (bionty.base.ExperimentalFactor method) (bionty.base.Gene method) (bionty.base.Organism method) (bionty.base.Pathway method) (bionty.base.Phenotype method) (bionty.base.Protein method) (bionty.base.PublicOntology method) (bionty.base.Tissue method) (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.core.StaticReference method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (clinicore.Biosample class method) (clinicore.ClinicalTrial class method) (clinicore.Medication class method) (clinicore.Patient class method) (clinicore.Treatment class method) (lamindb.core.AnnDataCatManager method) (lamindb.core.CanCurate class method) (lamindb.core.CatManager method) (lamindb.core.DataFrameCatManager method) (lamindb.core.MuDataCatManager method) (lamindb.core.QuerySet method) (lamindb.core.TiledbsomaCatManager method) (lamindb.curators.AnnDataCurator method) (lamindb.curators.Curator method) (lamindb.curators.DataFrameCurator method) (lamindb.Feature class method) (lamindb.Param class method) (lamindb.Person class method) (lamindb.Project class method) (lamindb.Reference class method) (lamindb.Schema class method) (lamindb.ULabel class method) (lamindb.User class method) (wetlab.Biologic class method) (wetlab.Biosample class method) (wetlab.CombinationPerturbation class method) (wetlab.Compound class method) (wetlab.CompoundPerturbation class method) (wetlab.Donor class method) (wetlab.EnvironmentalPerturbation class method) (wetlab.Experiment class method) (wetlab.GeneticPerturbation class method) (wetlab.PerturbationTarget class method) (wetlab.Techsample class method) (wetlab.Well class method) validated (lamindb.core.InspectResult property) validated_artifacts (lamindb.Schema attribute) ValidateFields (class in lamindb.core) ValidationError value (lamindb.core.FeatureValue attribute) (lamindb.core.ParamValue attribute) (wetlab.EnvironmentalPerturbation attribute) values (lamindb.Feature attribute) (lamindb.Param attribute) values() (bionty.base.Ontology method) (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) values_list() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) var_index (lamindb.core.AnnDataCatManager property) (lamindb.core.MuDataCatManager property) (lamindb.core.TiledbsomaCatManager property) var_names (lamindb.core.storage.AnnDataAccessor property) variable verbosity (lamindb.core.Settings property) version (bionty.base.BFXPipeline property) (bionty.base.BioSample property) (bionty.base.CellLine property) (bionty.base.CellMarker property) (bionty.base.CellType property) (bionty.base.DevelopmentalStage property) (bionty.base.Disease property) (bionty.base.Drug property) (bionty.base.Ethnicity property) (bionty.base.ExperimentalFactor property) (bionty.base.Gene property) (bionty.base.Organism property) (bionty.base.Pathway property) (bionty.base.Phenotype property) (bionty.base.Protein property) (bionty.base.PublicOntology property) (bionty.base.Tissue property) (bionty.core.StaticReference property) (bionty.Source attribute) (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.core.Context property) (lamindb.Transform attribute) versions (lamindb.Artifact property) (lamindb.Collection property) (lamindb.core.IsVersioned property) (lamindb.Transform property) view() (in module lamindb) view_lineage() (lamindb.Artifact method) (lamindb.Collection method) (lamindb.Transform method) view_parents() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Tissue method) (clinicore.Medication method) (lamindb.core.HasParents method) (lamindb.ULabel method) (wetlab.Compound method) view_tree() (lamindb.UPath method) W walk() (lamindb.UPath method) Well (class in wetlab) wetlab module with_name() (lamindb.UPath method) with_segments() (lamindb.UPath method) with_stem() (lamindb.UPath method) with_suffix() (lamindb.UPath method) write_bytes() (lamindb.UPath method) write_text() (lamindb.UPath method)